This makes standard use of shellcheck work without needing to provide extra configuration anywhere.
Also remove use of inline 'shellcheck disable' calls that are already defined in the .shellcheckrc and don't need to be set inline.
This change removes all deprecated commands. In many cases, users have been warned for a number of releases before the commands have been removed. All commands that were removed have existing alternatives.
This standardization makes it somewhat easier to read stacktraces as the command names are all uniform, so it will be slightly easier to scan trace output.
While I do not agree with _every_ style change, this will force Dokku to have consistent formatting across all shell scripts, which is arguably a Good Thing™.
The command used to reprocess everything is:
```shell
shfmt -l -bn -ci -i 2 -w .
```
This allows users to quickly show the state of any configured application, as well as the state of their server. In doing so, we make it easy for them to provide information necessary for debugging in a single command.
